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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111018203_111020675_R

Intron Information:

Intron Rank:
149646
Intron Class:
major
Intron Phase:
Intron Coordinates:
111018203 - 111020675
Intron Length:
2473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
TTTCACATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AATGCCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
69.5
41.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.71
0.8
78.4
34.4
Minor 5ss
46.9
-0.3
2.9
71.1
38.9
Minor BPS
61.1
0.43
1.7
75.28
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028042
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042336
111018153 - 111027066
8914