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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111020738_111026888_R

Intron Information:

Intron Rank:
149647
Intron Class:
major
Intron Phase:
Intron Coordinates:
111020738 - 111026888
Intron Length:
6151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCATTCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.8
0.74
0.7
78.3
30.6
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
62.8
0.48
1.7
75.74
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028042
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042336
111018153 - 111027066
8914