About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111049265_111049826_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111049265 - 111049826
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
CTTCTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CTTACCTTAAAA
Flanking Amino Acid:
PNYSELDTHTVIISPYLYES
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
87.9
0.85
0.7
80.6
31.4
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
72.3
0.7
1.4
77.65
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004010
111049186 - 111051612
2427