Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111050373_111051302_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111050373 - 111051302

Intron Length:

930

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAACA

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTACTTAATG

Flanking Amino Acid:

LLQGHIRTHTGEKPFSCPHC

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

76.1

32.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

83.4

0.75

0.7

81.5

30.4

Minor 5ss

33.9

-1.8

2.9

38.9

40.1

Minor BPS

77.1

0.71

1.5

80.51

35.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004010

111049186 - 111051612

2427