About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111268077_111337990_R

Intron Information:

Intron Rank:
129734
Intron Class:
major
Intron Phase:
Intron Coordinates:
111268077 - 111337990
Intron Length:
69914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AATTTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
84.7
1.17
0.9
91.52
30.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016983
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037440
111268038 - 111385874
117837