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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111339184_111352098_R

Intron Information:

Intron Rank:
129736
Intron Class:
major
Intron Phase:
Intron Coordinates:
111339184 - 111352098
Intron Length:
12915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.9
0.47
0.9
68.4
37.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
72.4
0.78
1.5
87.23
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016983
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037440
111268038 - 111385874
117837