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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111420980_111427887_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111420980 - 111427887
Intron Length:
6908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCATTGTAACT
Flanking Amino Acid:
MNGINNSNGMVDARSIPVLA
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.9
0.92
0.6
83.9
31.1
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
53.5
0.19
2
75.45
41.9

Associated Gene:

Gene:
UBE2V2
Ensembl Gene ID:
ENSAPLG00000022160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020864
111420524 - 111448564
28041