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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111428014_111431160_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111428014 - 111431160
Intron Length:
3147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GATGCATTAGTC
Flanking Amino Acid:
WTGMIIGPPRTNYENRIYSL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.9
0.78
0.8
77.7
36.7
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
47.5
-0.2
1.9
57.7
40.9

Associated Gene:

Gene:
UBE2V2
Ensembl Gene ID:
ENSAPLG00000022160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020864
111420524 - 111448564
28041