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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111431307_111448548_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111431307 - 111448548
Intron Length:
17242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGAG
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CATTCTTTCATT
Flanking Amino Acid:
MAGSTVKVPRNFRLL
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.3
63.2
43.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.1
0.88
0.7
81.8
35.3
Minor 5ss
26.1
-2.8
3.1
31
43.1
Minor BPS
61.7
0.45
1.7
76.34
41.1

Associated Gene:

Gene:
UBE2V2
Ensembl Gene ID:
ENSAPLG00000022160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020864
111420524 - 111448564
28041