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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111469139_111469460_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111469139 - 111469460
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
CTTTACTTGATT
Flanking Amino Acid:
FEDLRAQSDMAVTKEMFEEA
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
75
0.62
1
65.3
41.5
Major PPT
75.1
0.56
1
78.8
27.2
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
70.2
0.72
1.5
83.92
37.2

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775