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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111469941_111470421_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111469941 - 111470421
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
ATTTACTGGAGT
Flanking Amino Acid:
SEEASQALIEAYVDMRKIGS
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
83.5
0.75
0.8
80.5
31.5
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
50.3
0.09
2
75.44
41

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775