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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111474671_111476796_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111474671 - 111476796
Intron Length:
2126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TAATTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTGTCACTAATT
Flanking Amino Acid:
VQPGDRVNVTGIYRAVPIRV
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
68.1
0.41
1
66.3
44.7
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
53.3
0.18
2
73.71
43.3

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775