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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111477595_111478029_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111477595 - 111478029
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
GTATCTGTATTT
Flanking Amino Acid:
TRNMRSLNPEDIDQLITISG
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
78
0.63
0.9
73.2
36.9
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
47.8
-0
2.2
69.05
42.4

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775