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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111478169_111478622_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111478169 - 111478622
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAA
5'SS Class:
major
3'SS Sequence:
TAATTTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTCTATAATT
Flanking Amino Acid:
LYRQLICYPQEVIPTFDMAA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
70.3
31.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
1
73.4
40.6
Minor 5ss
29.9
-2.3
3.3
37.1
47.5
Minor BPS
70
0.71
1.5
85.65
34.4

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775