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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111478719_111478816_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111478719 - 111478816
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGTA
5'SS Class:
major
3'SS Sequence:
AAATATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTCTATTCAAAT
Flanking Amino Acid:
EPRYMQRLEEINMVGEPFLN
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
74.5
35.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
73.6
0.53
1
66.4
43.8
Minor 5ss
35.3
-1.7
3.5
49.6
46.6
Minor BPS
53.1
0.18
1.8
74.48
42.1

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775