Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111478913_111479045_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111478913 - 111479045

Intron Length:

133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTGGGTATCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

TTTCACACATCT

Flanking Amino Acid:

NVTACKEKFQRFLQRFIDPL

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

74.1

38.3

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

0.41

1.1

46.6

Minor 5ss

37.3

-1.4

3.1

47.6

48.1

Minor BPS

-0.3

2.2

72.43

43.5

Associated Gene:

Gene:

MCM4

Ensembl Gene ID:

ENSAPLG00000003491

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003586

111469046 - 111479820

10775