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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111479145_111479233_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111479145 - 111479233
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
TATTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
GCTTCCTTTATT
Flanking Amino Acid:
ARQVDLHSDGPAEDLVASEQ
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
84.2
0.77
0.8
78.4
30
Minor 5ss
39.1
-1.2
3.1
48.3
47.3
Minor BPS
69.6
0.7
1.6
80.7
41.2

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775