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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111479398_111479476_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
111479398 - 111479476
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACCCGCA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCTGACCGAGCC
Flanking Amino Acid:
FSSPPQFRHSAIPLDFDISS
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.3
48
43
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
85.2
0.79
0.7
81
24.1
Minor 5ss
40.7
-1
3.4
47.9
47.7
Minor BPS
37.9
-0.9
2
45.97
42.1

Associated Gene:

Gene:
MCM4
Ensembl Gene ID:
ENSAPLG00000003491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003586
111469046 - 111479820
10775