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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111484031_111484587_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111484031 - 111484587
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GATTGTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATATCAGTAATG
Flanking Amino Acid:
MYNFTKSVDEDPETSKEIFD
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
75.2
0.57
0.9
68.4
41.9
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
48.2
-0.2
2.3
59.92
41.9

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248