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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111485639_111485885_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111485639 - 111485885
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCAA
5'SS Class:
major
3'SS Sequence:
ATCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATCTCTTTTACA
Flanking Amino Acid:
NSALDSFLKQMSIMVAKDAE
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.3
39.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.5
0.8
0.8
79.9
31.5
Minor 5ss
36.2
-1.6
3.2
47.1
48.3
Minor BPS
66
0.5
1.6
73.23
38.5

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248