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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111486033_111487622_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111486033 - 111487622
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTCTGTCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTATTTTATTT
Flanking Amino Acid:
AIRGYGLFAAPCKAIHSKDV
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67.4
37.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.3
0.64
0.8
77.1
31.7
Minor 5ss
44.3
-0.6
2.4
57.5
40.7
Minor BPS
51.4
0.12
1.6
67.09
38.2

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248