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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111493256_111493632_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111493256 - 111493632
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTCTTAACC
Flanking Amino Acid:
FALFVKFGKEVTAKMKQYKD
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68
0.41
1
64
41.2
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
84.3
1.06
1
85.8
32.4

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248