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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111493753_111494164_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111493753 - 111494164
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGACACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTACATTTGACA
Flanking Amino Acid:
DIKAYIPALQNAFKLGLSCI
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
66.5
0.37
1
59.2
40.7
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
59.3
0.28
1.5
69.77
35.8

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248