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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111494325_111494597_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111494325 - 111494597
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTAG
5'SS Class:
major
3'SS Sequence:
TTTCGTTCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCGTTCATC
Flanking Amino Acid:
DGYLKNSTPTAEPQDNWEVK
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.4
39.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
0.9
78.3
34.8
Minor 5ss
37.8
-1.4
3.1
48.8
47.4
Minor BPS
56.8
0.2
2.4
77.77
38.8

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248