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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111508988_111509924_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111508988 - 111509924
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTATCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAATCTTAATT
Flanking Amino Acid:
VLTLLAKVLQIDSSVSFNTN
Intron Amino Acid Position:
1657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.4
0.66
0.9
70.3
39.9
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
70.5
0.72
1.2
78.67
37.2

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248