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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111511564_111512071_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111511564 - 111512071
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTATCTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTTGAGA
Flanking Amino Acid:
FQASFKRISRRSSTDKQVIL
Intron Amino Acid Position:
1790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
73.9
0.54
0.9
73.3
36.9
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
55.3
0.16
1.7
66.26
40.5

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248