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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111515099_111515642_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111515099 - 111515642
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTCCAAATG
Flanking Amino Acid:
GFLFTEKAEKNLLIFENLID
Intron Amino Acid Position:
1976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.6
0.73
0.9
76.3
37.7
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
48.8
-0.2
2
60.62
41.6

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248