About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111515709_111516136_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111515709 - 111516136
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATTTTGAAAC
Flanking Amino Acid:
RQYTFPVEIEVPLERKKRYI
Intron Amino Acid Position:
1998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
80
0.75
1
78.6
31
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
53.7
0.1
1.5
62.44
36.2

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248