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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111522932_111523024_F

Intron Information:

Intron Rank:
53
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
111522932 - 111523024
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCACATTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTTTCTTCACG
Flanking Amino Acid:
VVKNFPPLADRFMNAVFFLI
Intron Amino Acid Position:
2379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
56.2
0.14
1.2
58.3
41.6
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
64.1
0.3
1.9
70.32
43.3

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248