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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111523175_111523599_F

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111523175 - 111523599
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCTTCATCT
Flanking Amino Acid:
SKDFMQIMNHRDDERQRVCL
Intron Amino Acid Position:
2429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.2
0.68
0.7
78.3
29.3
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
60.6
0.41
1.8
79.81
42.6

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248