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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111523774_111524642_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111523774 - 111524642
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTATCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTAAGA
Flanking Amino Acid:
DILMWIYDNYSDPESQADGD
Intron Amino Acid Position:
2487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
87.1
29.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.5
0.57
0.8
73
30.7
Minor 5ss
35.2
-1.7
3.1
50.7
45.8
Minor BPS
61.2
0.35
1.9
72.55
38.8

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248