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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111526268_111526614_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111526268 - 111526614
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
QYEFTPTQNVSGRSSFNWLT
Intron Amino Acid Position:
2654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
65.7
40.1
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
36.7
-1.5
2.9
48.4
41.1
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248