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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111526831_111527772_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111526831 - 111527772
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTAT
5'SS Class:
major
3'SS Sequence:
ACTTTATACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCTACTTTATA
Flanking Amino Acid:
PEDEVDSKTKGIEERAEILR
Intron Amino Acid Position:
2726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
76.7
34.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
71
0.47
1
62.9
41.9
Minor 5ss
43.4
-0.7
2.6
58.3
46.3
Minor BPS
59.3
0.28
1.8
72.1
39.9

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248