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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111529232_111530442_F

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111529232 - 111530442
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTGTCTT
5'SS Class:
major
3'SS Sequence:
TCATAATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATAATT
Flanking Amino Acid:
LIAPLQGLAQKDPTFAKQLF
Intron Amino Acid Position:
2808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
73.3
37.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72
0.49
0.9
65.1
39.8
Minor 5ss
42.5
-0.8
3
58.6
40.3
Minor BPS
67.8
0.64
1.6
86.17
33.3

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248