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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111530623_111533300_F

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111530623 - 111533300
Intron Length:
2678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTCGTTCCATC
Flanking Amino Acid:
YFPPFIACIQEMSYEHRELL
Intron Amino Acid Position:
2868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.9
0.63
0.8
71.9
32.3
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
42.9
-0.5
2.2
59.42
40.4

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248