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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111534180_111534738_F

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111534180 - 111534738
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
ATTAATTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATCCTTTAAAT
Flanking Amino Acid:
YAEAAKYYDEALSQEVWEDG
Intron Amino Acid Position:
2984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.9
0.4
0.9
59.3
41.9
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
72.7
0.79
1.3
84.33
35.5

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248