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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111535683_111536247_F

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111535683 - 111536247
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCATCTTTCATC
Flanking Amino Acid:
ISNGMQIFMQSYSNIDSLLY
Intron Amino Acid Position:
3122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
52.6
0.06
1.7
59.25
40.5

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248