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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111544905_111545596_F

Intron Information:

Intron Rank:
75
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111544905 - 111545596
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTTTGTCAGCA
Flanking Amino Acid:
QLSNPVMLFKDWVEDVRNEL
Intron Amino Acid Position:
3595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
82.7
0.74
0.8
76.6
32
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
47.9
-0.1
2.4
71.1
41.3

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248