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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111549838_111550094_F

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111549838 - 111550094
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTGACACAAAT
Flanking Amino Acid:
HVKISGFDERISVMESLRKP
Intron Amino Acid Position:
3734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
68.1
0.41
1
66.8
33.1
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
43.2
-0.4
2.1
63.68
45.8

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248