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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111550654_111552301_F

Intron Information:

Intron Rank:
80
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111550654 - 111552301
Intron Length:
1648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGTTCTT
5'SS Class:
major
3'SS Sequence:
TTTTTGTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAG
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
MSEEEQFNYNSQKGPRAAYL
Intron Amino Acid Position:
3838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
70.7
41.1
Major BPS
50.8
0.02
1.4
49.1
38
Major PPT
85.5
0.8
0.7
81.6
30.4
Minor 5ss
33.4
-1.9
3.4
49.6
46.6
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248