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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111553986_111554451_F

Intron Information:

Intron Rank:
83
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111553986 - 111554451
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTTGGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTTTTGACT
Flanking Amino Acid:
FGHAFGSATQILPVPELMPF
Intron Amino Acid Position:
3960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
60.4
0.24
1
61.2
40.1
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
74.3
0.85
1.1
87.98
30.3

Associated Gene:

Gene:
PRKDC
Ensembl Gene ID:
ENSAPLG00000002697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002793
111480367 - 111556614
76248