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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111568566_111569055_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111568566 - 111569055
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTGTCATGAACA
Flanking Amino Acid:
SRSQSTVKVKLLQRTISSLL
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.6
0.78
0.8
76.7
37.4
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
65.5
0.48
1.7
77.89
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023254
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032582
111568434 - 111570481
2048