About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111569171_111570440_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111569171 - 111570440
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATGCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATCATT
Flanking Amino Acid:
NGKLELYPRDRGLLYCNQCS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
73.4
0.53
1
69.8
41.2
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
64.8
0.55
2
88.85
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023254
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032582
111568434 - 111570481
2048