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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111799765_111803966_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111799765 - 111803966
Intron Length:
4202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
MQPIWNKIIKIVPLWIAPNL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
73.3
36.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86.6
0.82
0.8
84.3
29.1
Minor 5ss
33.6
-1.9
3.7
49.4
47.1
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002529
111799735 - 111834488
34754