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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111804076_111806172_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111804076 - 111806172
Intron Length:
2097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
CAATTTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CACTACTCAATT
Flanking Amino Acid:
SFYDWDYTASGTSPGLVPTW
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
77.4
0.62
0.9
74.2
39.7
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
51.7
0.13
1.8
66.29
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002529
111799735 - 111834488
34754