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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111806248_111810513_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111806248 - 111810513
Intron Length:
4266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CCAACCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCTTTTCCAACC
Flanking Amino Acid:
AFTTFCAYALDSIDGKHARR
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
68.7
0.42
0.9
57.9
38.1
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
47.3
-0.2
1.8
58.19
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002529
111799735 - 111834488
34754