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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111829952_111833050_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111829952 - 111833050
Intron Length:
3099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTGTTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACCT
Flanking Amino Acid:
MVGVTFSNVICKVIVCQMSS
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.4
0.64
0.8
72.5
32.4
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
53.3
0.18
1.9
72.31
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002529
111799735 - 111834488
34754