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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111840507_111846489_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111840507 - 111846489
Intron Length:
5983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GTCTGCTGAAGG
Flanking Amino Acid:
GRPAAFCCFSEGHTEEHEGE
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
71.7
40.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
83.4
0.75
0.8
77.6
31.2
Minor 5ss
46.7
-0.3
3.2
67
44.2
Minor BPS
45.6
-0.4
2.2
52.65
47.6

Associated Gene:

Gene:
MAPRE2
Ensembl Gene ID:
ENSAPLG00000016320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017030
111840435 - 111895557
55123