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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111846616_111846711_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111846616 - 111846711
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
GTCCTATATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGTCCTATATCT
Flanking Amino Acid:
MEVLYASEEHVSRAVAARIS
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
67.1
0.39
1
59
41.2
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
52.1
0.14
1.9
75.39
40.9

Associated Gene:

Gene:
MAPRE2
Ensembl Gene ID:
ENSAPLG00000016320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017030
111840435 - 111895557
55123