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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111853441_111863517_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111853441 - 111863517
Intron Length:
10077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
TTGTACCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTGTACCT
Flanking Amino Acid:
KSHHANSPTAGAAKSSPASK
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.7
38.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.2
0.61
0.8
74.6
36
Minor 5ss
46.7
-0.3
2.5
62.1
42.5
Minor BPS
48.2
-0
2.2
75.45
41.9

Associated Gene:

Gene:
MAPRE2
Ensembl Gene ID:
ENSAPLG00000016320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034601
111840435 - 111866067
25633
ENSAPLT00000017030
111840435 - 111895557
55123